バイオインフォマティクス/成果発表・論文

投稿論文(技術提供含む)

  • Molecular architecture of the active mitochondrial protein gate.
    Takuya Shiota, Kenichiro Imai, Jian Qiu, Victoria L. Hewitt, Khershing Tan, Hsin-Hui Shen, Noriyuki Sakiyama, Yoshinori Fukasawa, Sikander Hayat, Megumi Kamiya, Arne Elofsson, Kentaro Tomii, Paul Horton, Nils Wiedemann, Nikolaus Pfanner, Trevor Lithgow, Toshiya Endo., Science. (2015)
  • Reduced Plasma Level of CXC Chemokine Ligand 7 in Patients with Pancreatic Cancer.
    Junichi Matsubara, Kazufumi Honda, Masaya Ono, Yoshinori Tanaka, Michimoto Kobayashi, Giman Jung, Koji Yanagisawa, Tomohiro Sakuma, Shoji Nakamori, Naohiro Sata, Hideo Nagai, Tatsuya Ioka, Takuji Okusaka, Tomoo Kosuge, Akihiko Tsuchida, Masashi Shimahara, Yohichi Yasunami, Tsutomu Chiba, Setsuo Hirohashi, and Tesshi Yamada. Cancer Epidemiology, Biomarkers & Prevention (2011)
    bioseminar_mail 
  • CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks.
    Funahashi A, Matsuoka Y, Jouraku A, Morohashi M, Kikuchi N, Kitano H. Proceedings of the IEEE (2008)
  • “CellDesigner: A Modeling Tool for Biochemical Networks.”, IEEE Special Issue on Computational
    Funahashi A, Jouraku A, Matsuoka Y, Morohashi M, Kikuchi N, Tanimura N, and Kitano H. Systems Biology (2007)
  • Strategy for simulation of CID spectra of N-linked oligosaccharides toward glycomics.
    Kameyama A, Nakaya S, Ito H, Kikuchi N, Angata T, Nakamura M, Ishida HK, Narimatsu H. J Proteome Res (2006)
  • Molecular cloning and characterization of a novel human beta1,3-glucosyltransferase, which is localized at the endoplasmic reticulum and glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domain.
    Sato T, Sato M, Kiyohara K, Sogabe M, Shikanai T, Kikuchi N, Togayachi A, Ishida H, Ito H, Kameyama A, Gotoh M, Narimatsu H. Glycobiology (2006)
  • Molecular cloning and characterization ofbeta1,4-N-acetylgalactosaminyltransferases IV synthesizing N,N'-diacetyllactosediamine.
    Gotoh M, Sato T, Kiyohara K, Kameyama A, Kikuchi N, Kwon YD, Ishizuka Y, Iwai T, Nakanishi H, Narimatsu H. FEBS Lett (2004)
  • A novel human b1,3-N-acetylgalactosaminyltransferase which synthesizes a unique carbohydrate structure, GalNAcb1-3GlcNAc.
    Hiruma T, Togayachi A, Okamura K, Sato T, Kikuchi N, Kwon YD, Nakamura A, Fujimura K, Gotoh M, Tachibana K, Ishizuka Y, Noce T, Nakamura H, Narimatsu H. J Biol Chem (2004)
  • Molecular cloning and characterization of a human multisubstrate specific nucleotide-sugar transporter homologous to Drosophila fringe connection.
    Suda T, Kamiyama S, Suzuki M, Kikuchi N, Nakayama K, Narimatsu H, Jigami Y, Aoki T, Nishihara S. J Biol Chem (2004)
  • Initiation of O-glycan synthesis in IgA1 hinge region is determined by a single enzyme, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2.
    Iwasaki H, Zhang Y, Tachibana K, Gotoh M, Kikuchi N, Kwon YD, Togayachi A, Kudo T, Kubota T, Narimatsu H. J Biol Chem (2003)
  • Cloning and characterization of a novel UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase, pp-GalNAc-T14.
    Wang H, Tachibana K, Zhang Y, Iwasaki H, Kameyama A, Cheng L, Guo J, Hiruma T, Togayachi A, Kudo T, Kikuchi N, Narimatsu H. Biochem Biophys Res Commun (2003)
  • Molecular cloning and identification of 3'-phosphoadenosine 5'-phosphosulfate transporter.
    Kamiyama S, Suda T, Ueda R, Suzuki M, Okubo R, Kikuchi N, Chiba Y, Goto S, Toyoda H, Saigo K, Watanabe M, Narimatsu H, Jigami Y, Nishihara S. J Biol Chem (2003)
  • Characterization of a heparan sulfate 3-O-sulfotransferase-5, an enzyme synthesizing a tetrasulfated disaccharide.
    Mochizuki H, Yoshida K, Gotoh M, Sugioka S, Kikuchi N, Kwon YD, Tawada A, Maeyama K, Inaba N, Hiruma T, Kimata K, Narimatsu H. J Biol Chem (2003)
  • Chondroitin sulfate synthase-2. Molecular cloning and characterization of a novel human glycosyltransferase homologous to chondroitin sulfate glucuronyltransferase, which has dual enzymatic activities.
    Yada T, Gotoh M, Sato T, Shionyu M, Go M, Kaseyama H, Iwasaki H, Kikuchi N, KwonYD, Togayachi A, Kudo T, Watanabe H, Narimatsu H, Kimata K. J Biol Chem (2003)
  • Chondroitin sulfate synthase-3. Molecular cloning and characterization.
    Yada T, Sato T, Kaseyama H, Gotoh M, Iwasaki H, Kikuchi N, Kwon YD, Togayachi A, Kudo T, Watanabe H, Narimatsu H, Kimata K. J Biol Chem (2003)
  • Comparison of glycosyltransferase families using the profile hidden Markov model.
    Kikuchi N, Kwon YD, Gotoh M, Narimatsu H. Biochem Biophys Res Commun (2003)
  • Molecular cloning and characterization of a novel human beta 1,4-N-acetylgalactosaminyltransferase, beta 4GalNAc-T3, responsible for the synthesis of N,N'-diacetyllactosediamine, galNAc beta 1-4GlcNAc.
    Sato T, Gotoh M, Kiyohara K, Kameyama A, Kubota T, Kikuchi N, Ishizuka Y, Iwasaki H, Togayachi A, Kudo T, Ohkura T, Nakanishi H, Narimatsu H. J Biol Chem (2003)
  • Enzymatic synthesis of chondroitin with a novel chondroitin sulfate N-acetylgalactosaminyltransferase that transfers N-acetylgalactosamine to glucuronic acid in initiation and elongation of chondroitin sulfate synthesis.
    Gotoh M, Sato T, Akashima T, Iwasaki H, Kameyama A, Mochizuki H, Yada T, Inaba N, Zhang Y, Kikuchi N, Kwon YD, Togayachi A, Kudo T, Nishihara S, Watanabe H, Kimata K, Narimatsu H. J Biol Chem (2002)

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